Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPD_2408ADP-ribosyl-(dinitrogen reductase) hydrolase. (297 aa)    
Predicted Functional Partners:
RPD_2407
NAD(+)--dinitrogen-reductase ADP-D-ribosyltransferase.
 
   
 0.962
RPD_1966
Phage portal protein, HK97.
   
   0.780
RPD_1761
Appr-1-p processing.
    
 0.684
RPD_0449
Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
   
 
 0.639
RPD_0451
Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
   
 
 0.639
RPD_2900
Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
   
 
 0.639
RPD_1081
4Fe-4S ferredoxin, iron-sulfur binding.
 
   
 0.572
RPD_1082
NifQ.
 
   
 0.536
RPD_2406
Transcriptional regulator, AraC family.
       0.532
RPD_1078
Dinitrogenase iron-molybdenum cofactor biosynthesis.
 
   
 0.485
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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