Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPD_2473Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (345 aa)    
Predicted Functional Partners:
RPD_0457
LysR, substrate-binding; Belongs to the LysR transcriptional regulatory family.
  
     0.737
RPD_2474
Gamma-glutamyltransferase 1. Threonine peptidase. MEROPS family T03.
     
 0.550
RPD_0875
Glutamate synthase (NADH) large subunit.
     
 0.523
RPD_2472
Conserved hypothetical protein.
       0.522
RPD_4197
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.516
RPD_0064
Transcriptional regulator, AraC family.
  
  
 0.509
RPD_2475
ABC-type branched-chain amino acid transport systems, periplasmic component.
       0.454
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
 
 
 
 0.420
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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