STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPD_2498Haloacid dehalogenase, type II. (242 aa)    
Predicted Functional Partners:
RPD_4103
Alpha/beta hydrolase fold.
 
 
 0.949
RPD_2215
Aldehyde dehydrogenase.
  
 
 0.903
RPD_2497
GCN5-related N-acetyltransferase.
  
    0.577
RPD_2210
Catechol 1,2-dioxygenase.
  
    0.554
RPD_2499
Exonuclease RecJ.
 
     0.539
RPD_2496
Fructose-1,6-bisphosphatase, class II.
       0.493
RPD_0245
Ribosomal-protein-alanine acetyltransferase.
  
    0.467
RPD_1117
PDZ/DHR/GLGF.
 
 
  0.467
RPD_1860
FAD dependent oxidoreductase.
  
  
 0.463
RPD_2673
Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
     
 0.433
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.