RPD_2525 protein (Rhodopseudomonas palustris BisB5)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

RPD_2525

Invasion associated locus B. (205 aa)

Predicted Functional Partners:

RPD_2524

0.774

RPD_2661

0.765

RPD_2526

0.762

RPD_3893

0.759

RPD_3269

0.746

RPD_2414

0.745

RPD_0181

0.744

RPD_3281

0.744

RPD_0323

0.741

RPD_4042

0.741

Your Current Organism:

Rhodopseudomonas palustris BisB5

NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
RPD_0181	RPD_0323	Protein of unknown function DUF1150.	Putative Omp2b porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	0.732
RPD_0181	RPD_2414	Protein of unknown function DUF1150.	Putative Omp2b porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	0.734
RPD_0181	RPD_2525	Protein of unknown function DUF1150.	Invasion associated locus B.	0.744
RPD_0181	RPD_2661	Protein of unknown function DUF1150.	Conserved hypothetical protein.	0.768
RPD_0181	RPD_3269	Protein of unknown function DUF1150.	Conserved hypothetical protein.	0.770
RPD_0181	RPD_3281	Protein of unknown function DUF1150.	Conserved hypothetical protein; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	0.736
RPD_0181	RPD_3893	Protein of unknown function DUF1150.	Conserved hypothetical protein.	0.736
RPD_0181	RPD_4042	Protein of unknown function DUF1150.	Conserved hypothetical protein.	0.670
RPD_0323	RPD_0181	Putative Omp2b porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	Protein of unknown function DUF1150.	0.732
RPD_0323	RPD_2525	Putative Omp2b porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	Invasion associated locus B.	0.741
RPD_0323	RPD_2661	Putative Omp2b porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	Conserved hypothetical protein.	0.770
RPD_0323	RPD_3269	Putative Omp2b porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	Conserved hypothetical protein.	0.680
RPD_0323	RPD_3893	Putative Omp2b porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	Conserved hypothetical protein.	0.768
RPD_0323	RPD_4042	Putative Omp2b porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	Conserved hypothetical protein.	0.763
RPD_2414	RPD_0181	Putative Omp2b porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	Protein of unknown function DUF1150.	0.734
RPD_2414	RPD_2525	Putative Omp2b porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	Invasion associated locus B.	0.745
RPD_2414	RPD_2661	Putative Omp2b porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	Conserved hypothetical protein.	0.771
RPD_2414	RPD_3269	Putative Omp2b porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	Conserved hypothetical protein.	0.681
RPD_2414	RPD_3893	Putative Omp2b porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	Conserved hypothetical protein.	0.769
RPD_2414	RPD_4042	Putative Omp2b porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	Conserved hypothetical protein.	0.763