Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RPD_2567Amine oxidase. (437 aa)    
Predicted Functional Partners:
RPD_2565
Cyclopropane-fatty-acyl-phospholipid synthase.
  
 0.996
RPD_2566
Protein of unknown function DUF1365.
  
 0.987
RPD_4336
Protein of unknown function DUF1295.
     0.888
ctaG
Cytochrome c oxidase assembly protein CtaG/Cox11; Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I; Belongs to the COX11/CtaG family.
 
      0.872
RPD_4335
Cyclopropane-fatty-acyl-phospholipid synthase.
 
  
 0.872
RPD_0339
Anti-sigma factor ChrR, putative.
 
  
 0.869
RPD_3119
Protein of unknown function DUF1295.
 
     0.712
RPD_2548
Conserved hypothetical protein.
 
   
 0.707
RPD_3098
Deoxyribodipyrimidine photo-lyase type I; Belongs to the DNA photolyase family.
 
   
 0.677
RPD_3216
Conserved hypothetical protein.
 
     0.582
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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