Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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Score
RPD_2647RelA/SpoT family protein; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. (762 aa)    
Predicted Functional Partners:
RPD_2258
Ppx/GppA phosphatase.
 
 
 0.942
RPD_2951
Ppx/GppA phosphatase.
 
 
 0.940
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
  
 
 0.940
RPD_2752
MazG family protein.
  
 
 0.933
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
 
  
 0.933
RPD_2912
Ribonucleoside-diphosphate reductase class II; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.
   
 
  0.904
RPD_3704
Ferredoxin.
     
 0.904
RPD_0773
Adenylyl cyclase class-3/4/guanylyl cyclase.
     
 0.900
RPD_1795
Adenylyl cyclase class-3/4/guanylyl cyclase.
     
 0.900
RPD_2346
Adenylate/guanylate cyclase.
     
 0.900
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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