Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_2805Sel1. (273 aa)    
Predicted Functional Partners:
ilvD
Dihydroxyacid dehydratase; Belongs to the IlvD/Edd family.
       0.812
RPD_2933
Tetratricopeptide TPR_2.
  
     0.765
RPD_3269
Conserved hypothetical protein.
  
     0.700
RPD_3670
Flagellar export FliJ.
  
     0.655
RPD_1242
Conserved hypothetical protein.
  
     0.645
RPD_0813
Invasion associated locus B.
  
     0.644
RPD_1951
Conserved hypothetical protein.
  
     0.643
RPD_3291
Conserved hypothetical protein.
  
     0.628
RPD_1241
Conserved hypothetical protein.
  
     0.604
RPD_0368
Signal transduction histidine kinase.
  
 
 
 0.603
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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