Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_2815Alcohol dehydrogenase GroES-like. (377 aa)    
Predicted Functional Partners:
RPD_1864
Conserved hypothetical protein.
 
   0.607
RPD_3154
Nitroreductase.
 
     0.607
RPD_1863
Aminoglycoside phosphotransferase.
 
   0.587
RPD_1866
acyl-CoA dehydrogenase-like.
 
 
 0.562
eno
Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
  
  
 0.549
RPD_3465
Gluconolactonase.
 
    0.541
RPD_1858
Putative acetyl-CoA acetyltransferase.
 
   
 0.510
RPD_1806
Glyoxalase/bleomycin resistance protein/dioxygenase.
 
 
 0.491
RPD_0273
Conserved hypothetical protein.
 
 
 0.473
RPD_4410
AMP-dependent synthetase and ligase.
 
 
 
 0.425
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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