Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_2836Conserved hypothetical protein. (164 aa)    
Predicted Functional Partners:
RPD_3969
3-oxoacyl-(acyl-carrier protein) synthase.
 
 
 0.703
RPD_2835
HAD-superfamily hydrolase subfamily IA, variant 3.
  
  
 0.685
RPD_2834
OmpA/MotB.
     
 0.464
RPD_2983
[Acyl-carrier-protein] S-malonyltransferase.
  
  
 0.438
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
 
 0.434
RPD_1938
Class II aldolase/adducin-like.
 
     0.428
RPD_3316
Conserved hypothetical protein.
 
   
 0.423
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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