STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPD_2906D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding. (329 aa)    
Predicted Functional Partners:
RPD_3906
Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine.
 
 0.926
RPD_2907
ABC transporter related; Belongs to the ABC transporter superfamily.
       0.669
RPD_2908
Binding-protein-dependent transport systems inner membrane component.
       0.669
RPD_2909
Binding-protein-dependent transport systems inner membrane component.
       0.669
RPD_2905
Amidase; Belongs to the amidase family.
       0.621
RPD_2910
Twin-arginine translocation pathway signal.
       0.606
cysC
Sulfate adenylyltransferase subunit 1 / adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate.
  
  
 0.583
RPD_2495
Homoserine dehydrogenase.
 
 
 0.579
RPD_1276
Histone deacetylase superfamily.
 
 
 0.538
RPD_4303
Histone deacetylase superfamily.
 
 
 0.531
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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