Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_2945DoxX. (150 aa)    
Predicted Functional Partners:
RPD_2946
Malate dehydrogenase (oxaloacetate decarboxylating) (NADP+)., Phosphate acetyltransferase.
  
    0.661
RPD_1766
Conserved hypothetical protein.
  
     0.608
RPD_3998
Conserved hypothetical protein.
  
     0.528
RPD_0324
Transcriptional regulator, MarR family.
 
     0.492
RPD_1436
ATPase, E1-E2 type.
   
  0.489
RPD_2092
MgtC/SapB transporter.
   
  0.489
RPD_2831
ATPase, E1-E2 type.
   
  0.489
RPD_1491
Transport-associated.
  
    0.440
RPD_0781
Conserved hypothetical protein.
 
     0.426
RPD_0702
TRAP transporter solute receptor, TAXI family.
 
     0.415
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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