Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_3012Sel1. (92 aa)    
Predicted Functional Partners:
RPD_3521
Type IV pili component-like.
  
     0.723
RPD_3514
TadE-like.
  
     0.695
RPD_1642
Hpt.
 
   
 0.675
RPD_3515
TadE-like.
  
     0.668
RPD_4344
Protein of unknown function DUF1465.
  
     0.664
RPD_3278
Type IV pilus assembly PilZ.
  
     0.624
RPD_3242
Hpt protein.
  
   
 0.606
RPD_3517
Flp/Fap pilin component.
  
     0.601
RPD_3522
Putative pilus assembly protein cpaE.
  
     0.598
RPD_0310
Conserved hypothetical protein.
  
     0.592
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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