Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_3071Conserved hypothetical protein. (91 aa)    
Predicted Functional Partners:
RPD_3070
Glutathione S-transferase-like.
       0.689
RPD_4042
Conserved hypothetical protein.
  
     0.660
RPD_0857
Conserved hypothetical protein.
  
     0.557
RPD_0886
Conserved hypothetical protein.
  
     0.549
RPD_4318
Thiamine monophosphate synthase.
  
     0.548
RPD_1656
Conserved hypothetical protein.
  
     0.538
RPD_0136
Protein of unknown function DUF1236.
  
     0.527
RPD_4036
Conserved hypothetical protein.
  
     0.507
RPD_4100
Chorismate mutase.
  
     0.494
RPD_3069
Conserved hypothetical protein.
       0.481
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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