Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_3074Transcriptional regulator, XRE family. (131 aa)    
Predicted Functional Partners:
RPD_3075
Magnesium transporter; Acts as a magnesium transporter.
       0.783
RPD_3073
2,5-didehydrogluconate reductase.
  
    0.701
RPD_3076
Polysaccharide deacetylase.
       0.603
RPD_3834
Ferritin and Dps; Belongs to the Dps family.
   
    0.603
vapC-6
PilT protein-like; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
 
     0.528
RPD_3072
Protein of unknown function DUF218.
       0.520
RPD_1195
Plasmid maintenance system antidote protein-like.
 
   
 0.498
RPD_3974
Protein of unknown function DUF497.
 
   
 0.449
RPD_0811
N/apple PAN precursor protein.
  
     0.430
RPD_0376
Transcriptional modulator of MazE/toxin, MazF.
 
   
 0.418
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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