Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_3097Conserved hypothetical protein. (132 aa)    
Predicted Functional Partners:
RPD_4336
Protein of unknown function DUF1295.
 
     0.739
RPD_3098
Deoxyribodipyrimidine photo-lyase type I; Belongs to the DNA photolyase family.
 
     0.700
RPD_3119
Protein of unknown function DUF1295.
 
     0.594
RPD_2567
Amine oxidase.
 
     0.561
RPD_2566
Protein of unknown function DUF1365.
 
     0.547
RPD_2193
Conserved hypothetical protein.
  
     0.429
RPD_3064
Conserved hypothetical protein.
  
     0.405
RPD_3096
Conserved hypothetical protein.
       0.403
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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