Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
RPD_3111NUDIX hydrolase. (264 aa)    
Predicted Functional Partners:
RPD_1265
Beta-lactamase-like.
 
     0.915
RPD_3112
Dihydrodipicolinate synthetase; Belongs to the DapA family.
     
 0.857
RPD_0975
Conserved hypothetical protein.
  
     0.668
RPD_3113
MaoC-like dehydratase.
 
    0.668
RPD_3110
Pyrrolo-quinoline quinone.
 
   
 0.616
RPD_3114
Protein of unknown function DUF35.
 
     0.554
RPD_3782
Putative monooxygenase.
  
   
 0.551
RPD_3115
Conserved hypothetical protein.
 
  
 0.530
RPD_3413
Epoxide hydrolase-like phosphatase.
 
    0.513
RPD_0270
acyl-CoA dehydrogenase-like.
 
   0.511
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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