Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPD_3113MaoC-like dehydratase. (286 aa)    
Predicted Functional Partners:
RPD_1878
Short-chain dehydrogenase/reductase SDR.
 0.978
RPD_2250
Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 0.948
RPD_3811
Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 0.944
RPD_2979
3-oxoacyl-[acyl-carrier-protein] reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 0.926
RPD_3326
Short-chain dehydrogenase/reductase SDR.
 
 0.926
RPD_1541
2-hydroxycyclohexane-1-carbonyl-CoA dehydrogenase.
 
 0.923
RPD_1388
3-hydroxybutyrate dehydrogenase.
 
 0.866
RPD_3114
Protein of unknown function DUF35.
 
 
 0.853
RPD_0305
3-oxoacyl-[acyl-carrier-protein] reductase.
 
 0.827
RPD_3115
Conserved hypothetical protein.
 
 
 0.822
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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