STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPD_3209Aminoglycoside phosphotransferase. (391 aa)    
Predicted Functional Partners:
RPD_3210
acyl-CoA dehydrogenase-like.
 
 0.992
RPD_0767
acyl-CoA dehydrogenase-like.
 
 0.982
RPD_1248
acyl-CoA dehydrogenase-like.
 
 0.979
RPD_3413
Epoxide hydrolase-like phosphatase.
   
 0.919
RPD_2199
acyl-CoA dehydrogenase-like.
 
 
 0.616
RPD_0707
Alcohol dehydrogenase, zinc-binding.
 
   0.585
RPD_2249
MaoC-like dehydratase.
 
 
 0.523
RPD_3106
acyl-CoA dehydrogenase-like.
 
 
 0.509
RPD_0265
Alcohol dehydrogenase, zinc-binding.
 
    0.508
RPD_2265
Alcohol dehydrogenase, zinc-binding.
 
    0.487
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.