STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPD_3263Diguanylate cyclase/phosphodiesterase. (823 aa)    
Predicted Functional Partners:
RPD_4076
Hpt sensor hybrid histidine kinase.
 
 
 0.914
RPD_0119
Sensor histidine kinase with PAS/PAC.
  
 
 0.784
RPD_0284
PAS/PAC sensor hybrid histidine kinase.
  
 
 0.784
RPD_3277
PAS/PAC sensor hybrid histidine kinase.
  
 
 0.784
RPD_0308
Diguanylate cyclase/phosphodiesterase.
 
 
0.749
RPD_1497
Hpt sensor hybrid histidine kinase.
  
 
 0.745
RPD_1287
Diguanylate phosphodiesterase.
 
 
 0.706
RPD_3546
Uncharacterized domain HDIG.
 
   
 0.699
RPD_0837
ATP-binding region, ATPase-like.
  
 
 0.693
RPD_1003
Adenylyl cyclase class-3/4/guanylyl cyclase.
 
 
 0.641
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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