Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_3266Cyclic nucleotide-binding. (220 aa)    
Predicted Functional Partners:
RPD_1340
Transcriptional regulator, Crp/Fnr family.
  
  
 
0.906
RPD_3267
Hypothetical protein.
       0.773
RPD_1005
Transcriptional regulator, Crp/Fnr family.
  
     0.758
RPD_1444
Transcriptional regulator, Crp/Fnr family.
  
   
 0.757
RPD_1723
Transcriptional regulator, Crp/Fnr family.
  
   
 0.741
RPD_2811
Transketolase, central region; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
   
 
 0.741
RPD_1742
Transcriptional regulator, Crp/Fnr family.
  
   
 0.734
RPD_4082
Cyclic nucleotide-binding.
  
   
 0.716
RPD_1522
Cyclic nucleotide-binding.
  
     0.684
RPD_0441
Cyclic nucleotide-binding protein.
  
   
 0.449
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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