Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_3281Conserved hypothetical protein; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane. (498 aa)    
Predicted Functional Partners:
RPD_4036
Conserved hypothetical protein.
  
     0.771
RPD_1945
Peptidoglycan-binding domain 1.
  
     0.770
RPD_2661
Conserved hypothetical protein.
  
     0.770
RPD_3893
Conserved hypothetical protein.
  
     0.768
RPD_4042
Conserved hypothetical protein.
  
     0.766
RPD_1641
Conserved hypothetical protein.
  
     0.761
RPD_0948
Conserved hypothetical protein.
  
     0.753
RPD_2525
Invasion associated locus B.
  
     0.744
RPD_2056
Conserved hypothetical protein.
  
     0.742
RPD_0795
Putative outer membrane protein.
  
 
 0.737
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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