Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_3308Transcriptional regulator, IclR family. (315 aa)    
Predicted Functional Partners:
RPD_2188
Allophanate hydrolase subunit 2.
  
  
 0.918
RPD_3310
TRAP transporter solute receptor, TAXI family.
 
     0.651
RPD_2636
Conserved hypothetical protein.
  
    0.598
RPD_2635
Allophanate hydrolase subunit 2.
  
    0.563
RPD_3309
Hypothetical protein.
       0.530
RPD_2360
Regulatory proteins, IclR.
  
     0.527
RPD_3311
TRAP transporter, 4TM/12TM fusion protein.
 
     0.467
RPD_1846
Protein of unknown function DUF1445; Belongs to the D-glutamate cyclase family.
  
    0.418
pxpA
LamB/YcsF; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
  
  
 0.416
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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