Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RPD_3310TRAP transporter solute receptor, TAXI family. (386 aa)    
Predicted Functional Partners:
RPD_3311
TRAP transporter, 4TM/12TM fusion protein.
 
 
 0.994
RPD_0610
Tripartite ATP-independent periplasmic transporter, DctQ component.
  
   
 0.716
RPD_4225
TRAP transporter, 4TM/12TM fusion protein.
 
  
 0.666
RPD_3308
Transcriptional regulator, IclR family.
 
     0.651
RPD_0609
TRAP dicarboxylate transporter- DctP subunit.
  
   
 0.558
RPD_3554
Transcriptional regulator, IclR family.
  
     0.554
RPD_1204
Putative CoA transferase, subunit B.
 
     0.502
RPD_1580
ABC transporter, periplasmic branched chain amino acid binding protein.
  
    0.479
RPD_1203
Putative CoA transferase, subunit A.
 
     0.477
RPD_1134
Regulatory proteins, IclR.
  
     0.468
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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