Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RPD_33342OG-Fe(II) oxygenase. (229 aa)    
Predicted Functional Partners:
RPD_3335
TonB-dependent receptor, plug.
 
  
 0.989
RPD_3332
Biopolymer transport protein ExbD/TolR.
  
    0.863
RPD_3333
MotA/TolQ/ExbB proton channel.
  
  
 0.853
RPD_3331
TonB-like.
 
    0.774
RPD_0700
TonB-dependent siderophore receptor.
 
  
 0.504
RPD_3336
Conserved hypothetical protein.
       0.453
RPD_2413
TonB-dependent receptor, plug.
 
  
 0.445
RPD_2359
TonB-like.
 
    0.441
RPD_3065
TonB-dependent receptor.
 
  
 0.432
RPD_4046
TonB-dependent receptor.
 
  
 0.426
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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