Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_3365Thioesterase-like. (179 aa)    
Predicted Functional Partners:
RPD_3364
FAD linked oxidase-like.
       0.702
RPD_2202
Protein of unknown function DUF849.
 
  
 0.507
RPD_3363
AsmA.
       0.480
RPD_2983
[Acyl-carrier-protein] S-malonyltransferase.
  
  
 0.438
RPD_3996
MaoC-like dehydratase.
 
   
 0.426
RPD_2746
Nitrile hydratase, alpha subunit.
  
     0.402
RPD_2821
Hypothetical protein.
  
 
   0.402
RPD_1433
AsmA.
 
     0.401
RPD_3997
MaoC-like dehydratase.
 
   
 0.401
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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