STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPD_3366Protein of unknown function DUF1328. (57 aa)    
Predicted Functional Partners:
RPD_1374
CsbD-like; Belongs to the UPF0337 (CsbD) family.
 
  
 0.903
RPD_4077
CsbD-like; Belongs to the UPF0337 (CsbD) family.
  
  
 0.807
RPD_2934
Protein of unknown function DUF1328.
  
     0.729
RPD_1491
Transport-associated.
  
  
 0.654
RPD_1344
CBS:transport associated.
  
  
 0.648
RPD_2194
Conserved hypothetical protein.
 
  
 0.476
RPD_3367
ATP-dependent DNA helicase, Rep family.
       0.422
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.