Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RPD_3369Protein of unknown function UPF0150. (155 aa)    
Predicted Functional Partners:
RPD_0905
Twin-arginine translocation pathway signal.
 
     0.632
RPD_2017
Outer membrane autotransporter barrel.
  
     0.591
RPD_3370
ABC transporter related.
       0.565
RPD_3371
ABC-2.
       0.564
RPD_0795
Putative outer membrane protein.
  
     0.537
RPD_2419
Agarase.
  
     0.498
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.486
RPD_0459
Histidine kinase, HAMP region.
  
     0.471
RPD_4330
Conserved hypothetical protein.
  
     0.444
RPD_2083
Radical SAM.
  
     0.440
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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