Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_3375FAD dependent oxidoreductase. (536 aa)    
Predicted Functional Partners:
RPD_3374
Conserved hypothetical protein.
 
     0.560
RPD_3765
Phytoene synthase.
 
  
 0.553
RPD_3575
Squalene/phytoene synthase.
 
  
 0.546
RPD_3770
Protoporphyrin IX magnesium-chelatase; Involved in bacteriochlorophyll biosynthesis; introduces a magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX.
  
  
 0.541
RPD_4399
Membrane-associated proteins in eicosanoid and glutathione metabolism (MAPEG).
  
     0.512
RPD_2774
Phytoene synthase.
  
  
 0.473
RPD_3771
Protoporphyrin IX magnesium-chelatase; Involved in bacteriochlorophyll biosynthesis; introduces a magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX.
  
  
 0.458
RPD_3745
Geranylgeranyl reductase.
  
  
 0.443
RPD_3576
Squalene/phytoene synthase.
  
  
 0.425
RPD_3747
Chlorophyll synthase.
  
  
 0.424
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.