Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_3404ABC transporter related. (600 aa)    
Predicted Functional Partners:
dnaK
Chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
 0.643
RPD_2074
ABC transporter related.
  
 
0.530
RPD_1276
Histone deacetylase superfamily.
  
 0.501
RPD_3720
AAA ATPase, central region.
   
 0.447
RPD_2298
Tetratricopeptide TPR_2.
  
 
 0.435
RPD_4303
Histone deacetylase superfamily.
   
 0.434
RPD_3405
Drug resistance transporter EmrB/QacA subfamily; Belongs to the major facilitator superfamily.
     
 0.419
RPD_0129
ABC transporter related.
  
 0.412
RPD_1793
ABC transporter related.
  
 0.412
RPD_3370
ABC transporter related.
  
 0.412
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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