Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_3408Extensin-like. (415 aa)    
Predicted Functional Partners:
RPD_1225
Cell wall hydrolase, SleB.
  
     0.644
RPD_0954
Conserved hypothetical protein.
  
     0.588
RPD_4036
Conserved hypothetical protein.
  
     0.584
RPD_3068
Conserved hypothetical protein.
  
     0.567
RPD_3286
Conserved hypothetical protein.
  
     0.549
RPD_2449
Conserved hypothetical protein.
  
     0.538
RPD_3409
Methyl-accepting chemotaxis sensory transducer.
       0.535
RPD_4121
Conserved hypothetical protein.
  
     0.527
RPD_2415
Lytic transglycosylase, catalytic.
  
     0.523
RPD_0859
Protein of unknown function DUF1007.
  
     0.521
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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