RPD_3513 protein (Rhodopseudomonas palustris BisB5)

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Score

RPD_3513

Cold-shock DNA-binding protein family. (70 aa)

Predicted Functional Partners:

RPD_3511

0.633

rpsQ

0.583

infA

0.572

rpsL

0.541

rpsS

0.534

rpmC

0.512

rplA

0.508

rplO

0.502

rplW

0.487

rpmE

0.459

Your Current Organism:

Rhodopseudomonas palustris BisB5

NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RPD_3511	RPD_3513	RPD_3511	RPD_3513	DEAD/DEAH box helicase-like; Belongs to the DEAD box helicase family.	Cold-shock DNA-binding protein family.	0.633
RPD_3511	infA	RPD_3511	RPD_3512	DEAD/DEAH box helicase-like; Belongs to the DEAD box helicase family.	Bacterial translation initiation factor 1 (bIF-1); One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.	0.885
RPD_3511	rplA	RPD_3511	RPD_3200	DEAD/DEAH box helicase-like; Belongs to the DEAD box helicase family.	LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.	0.737
RPD_3511	rplO	RPD_3511	RPD_3165	DEAD/DEAH box helicase-like; Belongs to the DEAD box helicase family.	LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.694
RPD_3511	rplW	RPD_3511	RPD_3182	DEAD/DEAH box helicase-like; Belongs to the DEAD box helicase family.	LSU ribosomal protein L23P; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.739
RPD_3511	rpmC	RPD_3511	RPD_3176	DEAD/DEAH box helicase-like; Belongs to the DEAD box helicase family.	LSU ribosomal protein L29P; Belongs to the universal ribosomal protein uL29 family.	0.434
RPD_3511	rpsL	RPD_3511	RPD_3189	DEAD/DEAH box helicase-like; Belongs to the DEAD box helicase family.	SSU ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy.	0.513
RPD_3511	rpsQ	RPD_3511	RPD_3175	DEAD/DEAH box helicase-like; Belongs to the DEAD box helicase family.	SSU ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.492
RPD_3513	RPD_3511	RPD_3513	RPD_3511	Cold-shock DNA-binding protein family.	DEAD/DEAH box helicase-like; Belongs to the DEAD box helicase family.	0.633
RPD_3513	infA	RPD_3513	RPD_3512	Cold-shock DNA-binding protein family.	Bacterial translation initiation factor 1 (bIF-1); One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.	0.572
RPD_3513	rplA	RPD_3513	RPD_3200	Cold-shock DNA-binding protein family.	LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.	0.508
RPD_3513	rplO	RPD_3513	RPD_3165	Cold-shock DNA-binding protein family.	LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.502
RPD_3513	rplW	RPD_3513	RPD_3182	Cold-shock DNA-binding protein family.	LSU ribosomal protein L23P; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.487
RPD_3513	rpmC	RPD_3513	RPD_3176	Cold-shock DNA-binding protein family.	LSU ribosomal protein L29P; Belongs to the universal ribosomal protein uL29 family.	0.512
RPD_3513	rpmE	RPD_3513	RPD_4343	Cold-shock DNA-binding protein family.	LSU ribosomal protein L31P; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.	0.459
RPD_3513	rpsL	RPD_3513	RPD_3189	Cold-shock DNA-binding protein family.	SSU ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy.	0.541
RPD_3513	rpsQ	RPD_3513	RPD_3175	Cold-shock DNA-binding protein family.	SSU ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.583
RPD_3513	rpsS	RPD_3513	RPD_3180	Cold-shock DNA-binding protein family.	SSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.534
infA	RPD_3511	RPD_3512	RPD_3511	Bacterial translation initiation factor 1 (bIF-1); One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.	DEAD/DEAH box helicase-like; Belongs to the DEAD box helicase family.	0.885
infA	RPD_3513	RPD_3512	RPD_3513	Bacterial translation initiation factor 1 (bIF-1); One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.	Cold-shock DNA-binding protein family.	0.572