Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_3524Type II secretion system protein. (324 aa)    
Predicted Functional Partners:
RPD_3519
Flp pilus assembly CpaB.
 
 
 0.999
RPD_3522
Putative pilus assembly protein cpaE.
 
 
 0.999
RPD_3523
Type II secretion system protein E.
 
 
 0.999
RPD_3525
Type II secretion system protein.
 
 
 0.999
RPD_3520
Type II and III secretion system protein; Belongs to the bacterial secretin family.
 
 
 0.997
RPD_3518
Peptidase A24A, prepilin type IV.
 
  
 0.959
RPD_3515
TadE-like.
 
  
 0.956
RPD_3521
Type IV pili component-like.
 
   
 0.936
RPD_3517
Flp/Fap pilin component.
 
  
 0.884
RPD_3514
TadE-like.
 
  
 0.880
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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