STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPD_3552AMP-dependent synthetase and ligase. (550 aa)    
Predicted Functional Partners:
RPD_3551
Acetyl-CoA C-acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.834
RPD_3553
Short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.734
RPD_1255
AMP-dependent synthetase and ligase.
  
  
 
0.715
RPD_1871
AMP-dependent synthetase and ligase.
  
  
 
0.704
RPD_4410
AMP-dependent synthetase and ligase.
  
  
 
0.704
RPD_2203
AMP-dependent synthetase and ligase.
  
  
 
0.702
RPD_1569
AMP-dependent synthetase and ligase.
 
 
0.677
RPD_1323
AMP-dependent synthetase and ligase.
  
  
 
0.667
RPD_3550
acyl-CoA dehydrogenase-like.
  
    0.487
RPD_3554
Transcriptional regulator, IclR family.
   
   0.420
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.