Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
RPD_3558Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. (336 aa)    
Predicted Functional Partners:
RPD_3557
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.998
RPD_3559
Extracellular ligand-binding receptor.
 
 0.985
RPD_3560
Extracellular ligand-binding receptor.
 
 0.982
RPD_3555
ABC transporter related.
  
 0.981
RPD_3562
Putative leucine/isoleucine/valine-binding protein precursor.
 
 0.980
RPD_3561
Extracellular ligand-binding receptor.
 
 0.979
RPD_3556
ABC transporter related.
  
 0.977
RPD_2362
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.878
RPD_1516
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.876
RPD_1518
ABC transporter related.
  
 0.873
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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