Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RPD_3579Putative RND superfamily transporter. (788 aa)    
Predicted Functional Partners:
RPD_4133
Conserved hypothetical protein.
  
     0.658
RPD_2818
ErfK/YbiS/YcfS/YnhG.
  
     0.553
RPD_1418
Protein of unknown function UPF0157.
  
     0.532
RPD_1920
Twin-arginine translocation pathway signal.
  
     0.526
RPD_0996
Conserved hypothetical protein.
  
     0.515
RPD_4097
Conserved hypothetical protein.
  
     0.511
RPD_3683
Conserved hypothetical protein.
 
    0.491
RPD_0702
TRAP transporter solute receptor, TAXI family.
  
     0.485
RPD_3437
Conserved hypothetical protein.
  
     0.484
RPD_2780
Conserved hypothetical protein.
  
     0.478
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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