STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPD_3580Radical SAM. (527 aa)    
Predicted Functional Partners:
RPD_1486
Bacteriochlorophyll 4-vinyl reductase.
  
  
 0.746
RPD_3576
Squalene/phytoene synthase.
 
  
 0.620
RPD_3573
Squalene cyclase.
 
   
 0.615
RPD_3572
Conserved hypothetical protein.
 
   
 0.608
RPD_3571
Radical SAM.
 
  
 0.600
RPD_3899
Conserved hypothetical protein.
  
     0.553
RPD_0062
Magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase.
 
     0.550
RPD_0702
TRAP transporter solute receptor, TAXI family.
  
     0.537
RPD_3601
Cyclic nucleotide-binding protein.
  
    0.473
RPD_1959
Conserved hypothetical protein.
  
     0.450
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.