Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_3582Cache, type 2. (151 aa)    
Predicted Functional Partners:
RPD_3536
Cytochrome c, class I.
  
  
 0.913
RPD_3742
Cytochrome c, class I.
  
  
 0.912
RPD_3011
Hypothetical protein.
  
     0.698
RPD_3581
Methyl-accepting chemotaxis sensory transducer.
     
 0.597
RPD_2426
Conserved hypothetical protein.
  
    0.533
RPD_1919
Chemotaxis sensory transducer.
 
    
 0.462
RPD_3583
Transglutaminase-like.
       0.433
RPD_3584
Protein of unknown function DUF404.
       0.433
RPD_0133
Von Willebrand factor, type A.
  
     0.418
RPD_3585
Transglutaminase-like.
       0.400
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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