STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPD_3583Transglutaminase-like. (292 aa)    
Predicted Functional Partners:
RPD_3584
Protein of unknown function DUF404.
 
  
 0.980
RPD_3585
Transglutaminase-like.
 
    
0.868
RPD_2239
Protein of unknown function DUF403.
  
 0.856
RPD_2240
Protein of unknown function DUF404.
 
    0.832
RPD_3214
Transglutaminase-like.
 
     0.744
RPD_2237
Putative proteasome-type protease.
 
    0.439
RPD_3582
Cache, type 2.
       0.433
RPD_3586
HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
       0.431
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.