STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPD_3585Transglutaminase-like. (1128 aa)    
Predicted Functional Partners:
RPD_3584
Protein of unknown function DUF404.
 
  
 0.981
RPD_3583
Transglutaminase-like.
 
    
0.817
RPD_3838
Transglutaminase-like.
 
     0.736
RPD_2240
Protein of unknown function DUF404.
 
  
 0.731
RPD_3214
Transglutaminase-like.
 
     0.729
RPD_2239
Protein of unknown function DUF403.
 
  
 0.664
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
  
 
  0.608
surE
5'-nucleotidase / 3'-nucleotidase / exopolyphosphatase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
    
  0.511
RPD_4302
5'-Nucleotidase-like; Belongs to the 5'-nucleotidase family.
    
  0.510
purH
IMP cyclohydrolase / phosphoribosylaminoimidazolecarboxamide formyltransferase.
     
  0.499
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.