STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPD_3586HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family. (276 aa)    
Predicted Functional Partners:
RPD_3589
2-oxo-hepta-3-ene-1,7-dioic acid hydratase.
 
 0.996
RPD_0255
Succinate semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.912
RPD_3587
Malate/L-lactate dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family.
 
     0.757
RPD_3590
5-carboxymethyl-2-hydroxymuconate isomerase.
 
  
 0.740
RPD_3593
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase.
 
  
 0.565
RPD_2210
Catechol 1,2-dioxygenase.
 
  
 0.562
RPD_1854
3-hydroxyisobutyrate dehydrogenase.
 
  
 0.560
RPD_3592
3,4-dihydroxyphenylacetate 2,3-dioxygenase HpaD.
 
   
 0.542
RPD_0982
Protocatechuate 4,5-dioxygenase.
  
  
 0.500
RPD_0983
Protocatechuate 4,5-dioxygenase.
  
  
 0.500
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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