Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPD_3587Malate/L-lactate dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family. (366 aa)    
Predicted Functional Partners:
RPD_2593
Branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase.
  
  0.915
RPD_3925
Aminotransferase.
     
 0.905
hisC
Histidinol phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
     
  0.900
RPD_3586
HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
 
     0.757
RPD_3588
Transcriptional regulator, MarR family.
  
  
 0.552
RPD_1708
Fumarase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
 0.523
RPD_3589
2-oxo-hepta-3-ene-1,7-dioic acid hydratase.
  
    0.469
RPD_1844
Amidase, hydantoinase/carbamoylase.
 
  
 0.431
RPD_4395
Major facilitator superfamily MFS_1.
 
    0.426
RPD_2938
Acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase.
 
  
 0.406
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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