Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPD_3607AMP-dependent synthetase and ligase. (624 aa)    
Predicted Functional Partners:
RPD_1397
Amidohydrolase 2.
 
   
 0.712
RPD_0880
2,3-dihydro-2,3-dihydroxybenzoyl-CoA ring cleavage enzyme.
 
 
 0.704
RPD_3605
acyl-CoA dehydrogenase-like.
 
 
 0.664
RPD_3608
Enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.662
RPD_3606
acyl-CoA dehydrogenase-like.
 
 
 0.660
RPD_0878
benzoate-CoA ligase.
  
  
 0.646
RPD_0881
benzoyl-CoA oxygenase, component B.
  
     0.644
RPD_1893
Transcriptional regulator, MarR family.
 
     0.643
RPD_1526
benzoate-CoA ligase.
  
  
 0.638
RPD_0879
Alpha/beta hydrolase fold.
  
 
 
 0.602
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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