Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
RPD_3702Protein of unknown function DUF463, YcjX-like protein. (489 aa)    
Predicted Functional Partners:
RPD_3703
Conserved hypothetical protein 1620.
 
  
 0.995
RPD_0158
Murein endopeptidase. Metallo peptidase. MEROPS family M74.
  
     0.618
RPD_3701
Hly-III related proteins.
       0.565
RPD_0902
ErfK/YbiS/YcfS/YnhG.
  
     0.508
RPD_4246
ErfK/YbiS/YcfS/YnhG.
  
     0.492
RPD_1406
Protein of unknown function DUF882.
  
     0.491
RPD_3454
ErfK/YbiS/YcfS/YnhG.
  
     0.489
RPD_0813
Invasion associated locus B.
  
     0.474
RPD_1403
Protein of unknown function DUF1036.
  
     0.449
RPD_1708
Fumarase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
       0.448
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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