Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_3706Conserved hypothetical protein. (216 aa)    
Predicted Functional Partners:
RPD_1967
Conserved hypothetical protein.
  
     0.573
RPD_0414
Conserved hypothetical protein.
  
     0.560
RPD_3391
Conserved hypothetical protein.
 
     0.544
RPD_3057
Conserved hypothetical protein.
  
     0.537
RPD_3707
L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
       0.530
RPD_1107
Putative membrane protein involved in export of O-antigen.
  
     0.503
RPD_4301
Conserved hypothetical protein.
  
     0.499
RPD_1448
Phasin 2.
  
     0.490
RPD_1664
Conserved hypothetical protein.
  
     0.456
RPD_1981
Conserved hypothetical protein.
  
     0.450
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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