Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPD_3741Transcriptional regulator PpsR. (440 aa)    
Predicted Functional Partners:
RPD_3740
Phytochrome.
 
   
 0.896
RPD_3730
Photosynthetic reaction centre, H-chain.
 
   
 0.808
RPD_3737
2-vinyl bacteriochlorophyllide hydratase.
 
   
 0.807
RPD_3757
Chlorophyll synthesis pathway, bchC.
  
  
 0.797
RPD_3752
Antenna complex, alpha/beta subunit; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
  
   
 0.791
RPD_3729
Putative photosynthetic complex assembly protein.
 
     0.785
RPD_3728
Putative photosynthetic complex assembly protein.
 
     0.781
RPD_3731
PUCC protein.
 
   
 0.781
bchN
Light-independent protochlorophyllide reductase, N subunit; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex.
 
     0.781
RPD_3725
Conserved hypothetical protein.
 
     0.776
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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