Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
RPD_3744TspO/MBR-related protein. (155 aa)    
Predicted Functional Partners:
RPD_3747
Chlorophyll synthase.
  
  
 0.903
RPD_3745
Geranylgeranyl reductase.
  
  
 0.898
RPD_3746
PUCC protein.
 
    0.891
RPD_3748
Transcriptional regulator, Fis family / DNA-binding protein Fis.
     
 0.833
RPD_3743
Conserved hypothetical protein.
       0.724
RPD_3098
Deoxyribodipyrimidine photo-lyase type I; Belongs to the DNA photolyase family.
 
  
 0.696
RPD_3770
Protoporphyrin IX magnesium-chelatase; Involved in bacteriochlorophyll biosynthesis; introduces a magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX.
  
  
 0.457
RPD_3760
FAD dependent oxidoreductase.
 
  
 0.454
RPD_3749
Photosynthetic reaction center M subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.
  
  
 0.443
RPD_3750
Photosynthetic reaction center L subunit.
  
  
 0.440
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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