RPD_3758 protein (Rhodopseudomonas palustris BisB5)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

RPD_3758

hydroxyneurosporene-O-methyltransferase. (380 aa)

Predicted Functional Partners:

RPD_3761

0.988

RPD_3760

0.977

RPD_3759

0.961

RPD_3757

0.928

RPD_3755

0.909

RPD_3754

0.908

RPD_3756

0.895

RPD_3750

0.831

RPD_3752

0.830

RPD_3749

0.829

Your Current Organism:

Rhodopseudomonas palustris BisB5

NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
RPD_3749	RPD_3750	Photosynthetic reaction center M subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.	Photosynthetic reaction center L subunit.	0.997
RPD_3749	RPD_3752	Photosynthetic reaction center M subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.	Antenna complex, alpha/beta subunit; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	0.999
RPD_3749	RPD_3754	Photosynthetic reaction center M subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.	Chlorophyllide reductase subunit Z.	0.940
RPD_3749	RPD_3755	Photosynthetic reaction center M subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.	Chlorophyllide reductase subunit Y.	0.877
RPD_3749	RPD_3756	Photosynthetic reaction center M subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.	Chlorophyllide reductase iron protein subunit X; Belongs to the NifH/BchL/ChlL family.	0.925
RPD_3749	RPD_3757	Photosynthetic reaction center M subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.	Chlorophyll synthesis pathway, bchC.	0.860
RPD_3749	RPD_3758	Photosynthetic reaction center M subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.	hydroxyneurosporene-O-methyltransferase.	0.829
RPD_3749	RPD_3759	Photosynthetic reaction center M subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.	Farnesyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.	0.781
RPD_3749	RPD_3760	Photosynthetic reaction center M subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.	FAD dependent oxidoreductase.	0.747
RPD_3749	RPD_3761	Photosynthetic reaction center M subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.	Hydroxyneurosporene synthase.	0.828
RPD_3750	RPD_3749	Photosynthetic reaction center L subunit.	Photosynthetic reaction center M subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.	0.997
RPD_3750	RPD_3752	Photosynthetic reaction center L subunit.	Antenna complex, alpha/beta subunit; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	0.999
RPD_3750	RPD_3754	Photosynthetic reaction center L subunit.	Chlorophyllide reductase subunit Z.	0.962
RPD_3750	RPD_3755	Photosynthetic reaction center L subunit.	Chlorophyllide reductase subunit Y.	0.889
RPD_3750	RPD_3756	Photosynthetic reaction center L subunit.	Chlorophyllide reductase iron protein subunit X; Belongs to the NifH/BchL/ChlL family.	0.960
RPD_3750	RPD_3757	Photosynthetic reaction center L subunit.	Chlorophyll synthesis pathway, bchC.	0.859
RPD_3750	RPD_3758	Photosynthetic reaction center L subunit.	hydroxyneurosporene-O-methyltransferase.	0.831
RPD_3750	RPD_3759	Photosynthetic reaction center L subunit.	Farnesyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.	0.783
RPD_3750	RPD_3760	Photosynthetic reaction center L subunit.	FAD dependent oxidoreductase.	0.750
RPD_3750	RPD_3761	Photosynthetic reaction center L subunit.	Hydroxyneurosporene synthase.	0.830