Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPD_3765Phytoene synthase. (349 aa)    
Predicted Functional Partners:
RPD_3766
Amine oxidase.
 
 0.998
RPD_3745
Geranylgeranyl reductase.
 
 
 0.968
RPD_3759
Farnesyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
 
 0.967
RPD_3760
FAD dependent oxidoreductase.
  
 0.913
RPD_2774
Phytoene synthase.
    
 0.912
RPD_0313
Farnesyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 0.900
RPD_1214
Farnesyltranstransferase; Belongs to the FPP/GGPP synthase family.
  
 0.898
RPD_3767
Alpha/beta hydrolase fold.
 
  
 0.855
RPD_3761
Hydroxyneurosporene synthase.
 
  
 0.837
RPD_0061
Undecaprenyl pyrophosphate synthetase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
   
 
 0.815
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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