Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RPD_3829Phosphonate C-P lyase system, PhnK. (266 aa)    
Predicted Functional Partners:
RPD_3825
Phosphonate metabolism PhnG.
 
 
 0.999
RPD_3827
Phosphonate metabolism.
 
 
 0.999
RPD_3828
Phosphonate metabolism PhnJ; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1- methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose. Belongs to the PhnJ family.
 
 0.999
RPD_3826
Phosphonate metabolism.
 
 
 0.998
RPD_3830
Phosphonate C-P lyase system, PhnL.
 
 
0.997
RPD_3831
Phosphonate metabolism PhnM.
 
  
 0.987
phnN
Phosphonate metabolism, 1,5-bisphosphokinase (PRPP-forming) PhnN; Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP).
 
  
 0.982
RPD_3824
Transcriptional regulator, GntR family.
 
  
 0.964
RPD_3818
Phosphonate metabolism PhnM.
 
  
 0.930
RPD_3821
Phosphonate-binding periplasmic protein.
 
  
 0.916
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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