STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPD_3908Putative sensor (PAS) domain for methyl-accepting chemotaxis sensory transducer. (174 aa)    
Predicted Functional Partners:
RPD_3907
Methyl-accepting chemotaxis sensory transducer.
 
 0.941
RPD_1919
Chemotaxis sensory transducer.
 
 0.827
RPD_1394
Methyl-accepting chemotaxis sensory transducer.
 
 0.606
RPD_0337
Methyl-accepting chemotaxis sensory transducer.
 
 0.605
RPD_0336
Chemotaxis sensory transducer.
 
 0.602
RPD_0225
Methyl-accepting chemotaxis protein.
 
 
 0.596
RPD_2465
Methyl-accepting chemotaxis sensory transducer.
 
 0.590
RPD_0226
Methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor.
 
 
 0.585
RPD_3677
CheW protein.
 
 
 0.542
RPD_3904
Methyl-accepting chemotaxis sensory transducer.
 
 0.535
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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